miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|57503835|gb|CX535116.1|CX535116 GGCACGAGGGAAGCAGCAAAAACTGCTTCAGATCAAATCTGAATTAGATTCTTCTTCTTCTTCGTCAACGGAGATGATGG
TGGTTGATGATGATGACATGTATGGGCTGAGCTGGAGGTTGGCAATGGAGACAAACAATAATGTGCGTCCTTGGAAGACA
ATCCCACTTCGTTGCTACAAGCATGTTGAGAATTACATGATTGGTGGACAATACGAGCATGACATGAACCTCATCGTGGA
TGAAATTATGTTTTATGCATCTCAGATTACTCTTTCTACTTCTACTACTACTACTACTCATCAAGATGCTTGGGTTTTGG
ACGTGGACGACACTTGTATCTCTAATATTCCTTATTATAAAGCTAAACGATTTGGATGCGACCCATTTGATTCGGCGATG
TTCAAGGCATGGATCAATCAAGGAATGTGCCCTGCAAATCCTGTGGTACTAAGATTGTTTAAAACGTTGATAGAGAAAGG
ATTCAAAGTGTTCTTAGTAACGGGTAGATACGAAGGAACACTTGCCAAAATCACTACGGACAATTTGCACAACCAAGGAT
TCATCGGCTACCAACGCCTTATTTTAAGGAGTATGAAATATAAAGGACAAAGTGCAGTGAAATACAAGTCAT




Most similar to sp|P27061|PPA1_SOLLC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum
           GN=APS1 PE=2 SV=1
          Length = 255

 Score =  137 bits (344), Expect = 7e-32
 Identities = 69/174 (39%), Positives = 102/174 (58%)
 Frame = +2

Query: 110 SWRLAMETNNNVRPWKTIPLRCYKHVENYMIGGQYEHDMNLIVDEIMFYASQIXXXXXXX 289
           +WR  +ETNN + PWKTIP  C  +V+ YM+G  Y+ +++ + DE   YA  +       
Sbjct: 45  TWRFVVETNN-LSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG- 102

Query: 290 XXXHQDAWVLDVDDTCISNIPYYKAKRFGCDPFDSAMFKAWINQGMCPANPVVLRLFKTL 469
               +D W+ DVD+T +SN+PYY   R+G + FD   F  W+  G  PA    L+L++ +
Sbjct: 103 ----RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEV 158

Query: 470 IEKGFKVFLVTGRYEGTLAKITTDNLHNQGFIGYQRLILRSMKYKGQSAVKYKS 631
           ++ GFKVFL+TGR E     +T +NL N GF  + +LILR     G++A  YKS
Sbjct: 159 LKLGFKVFLLTGRSE-RHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKS 211